Package: LBLGXE
Type: Package
Title: Bayesian Lasso for detecting Rare (or Common) Haplotype
        Association and their interactions with Environmental
        Covariates
Version: 1.3
Date: 2016-04-15
Author: Yuan Zhang, Shuang Xia, Swati Biswas, and Shili Lin
Maintainer: Yuan Zhang <yxz112020@utdallas.edu>
Description: This function takes a dataset of haplotypes and environmental covariates in which rows for individuals of uncertain phase have been augmented by "pseudo-individuals" who carry the possible multilocus genotypes consistent with the single-locus phenotypes. Bayesian lasso is used to find the posterior distributions of logistic regression coefficients, which are then used to calculate Bayes Factor and credible set to test for association with haplotypes, environmental covariates and interactions. This version can also handle complex sampling data, in particular, frequency matched cases and controls with controls obtained using stratified sampling.
License: GPL-3
LazyLoad: yes
Built: R 3.2.3; x86_64-w64-mingw32; 2016-04-15 05:47:02 UTC; windows
Archs: x64
