Gerard and Kubatko -- HybTree

HybTree: A Perl Script for Estimating Hybridization and Time Scales In the Presence of Deep Coalescence

The perl scripts available for download on this page can be used to estimate the extent and timing of hybridization from a sample of gene tree topologies. It is based on the method described in:

Gerard D, Gibbs HL, Kubatko L, 2011. "Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling".

More details and instructions for running the analysis are included in the manual. The following files are available to download:

These scripts were created by David Gerard and are maintained by David Gerard and Laura Kubatko. They were created as part of OSU's RUMBA Program, which is supported by the National Science Foundation under Grant DBI 0827256. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Please contact us with questions: David Gerard (gerard.16) or Laura Kubatko (kubatko.2) -- both

Copyright 2011 by David Gerard and Laura Kubatko. This software is provided "as is" without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software. The software is distributed free of charge.

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