[Infile for Example 3: Obtaining a Random Sample of Gene Trees]

begin coal;

  ntax = 4;
  taxa names = A B C D;
  gene tree file = simulated;
  species tree file = ex3_speciestree.tre;
  intra = no;
  theta = 2;
  ngtrees = 100;
  nstrees = 1;
  blstyle = none; [branch lengths read from file]
  logfile = ex3_logfile.log;
  outfile = ex3_output.out;
  seed1=12345;
  seed2=67890;

end;

