The source package may be downloaded from the links below and can be installed on UNIX and Mac OS. In order to compile and install it, GNU Scientific Library (GSL) must be installed in advance.
Software (source package; a .tar.gz file)
Instructions for installing and runing MDM.
Complete Manual (pdf file)
Simulation code (with TFBS and TSS information needed in the simulation)
Liang Niu and Shili Lin, Statistical Models for Detecting Differential Chromatin Interactions Mediated by a Protein, submitted.
If you have any questions, please email Liang Niu at firstname.lastname@example.org or Shili Lin at email@example.com.