Stat 8750.03: Statistical Genetics and Bioinformatics Reading Group
Spring 2025
Time: Fridays 1:00-2:00 PM; Place: CH212
Information on reading materials will be updated as they become available.
For further information about this semester's reading group, please contact
Shili Lin.
- Friday, January 1/24, 2025
Discussion Leader: Yongqi Liu
Hartigan’s K-Means Versus Lloyd’s K-Means – Is It Time for a Change?
by Slonim et al. Proceedings of the Twenty-Third International Joint Conference on Artificial Intelligence.
- Friday, February 7, 2025
Discussion Leader: Emerson Webb
Joint TensorModeling of Single Cell 3D Genome and Epigenetic Data with Muscle
by Park and Keles. JASA 2024:2464–2477.
- Friday, February 14, 2025
Discussion Leader: Dan Kinnamon
Cauchy Combination Test: A Powerful Test With
Analytic p-Value Calculation Under Arbitrary
Dependency Structures.
by Liu and Xie. JASA 2020, 155:393–402.
- Friday, February 21, 2025
Discussion Leader: Atinuke Adebanji
Learning high-order interactions for polygenic
risk prediction
by Massi et al. PLoS ONE 18(2):
e0281618.
- Friday, February 28, 2025
Discussion Leader: Meng Wang
Probabilistic harmonization and annotation of
single-cell transcriptomics data with deep
generative models
by Xu et al. Molecular Systems Biology (2021) 17: e9620.
- Friday, March 21, 2025
Discussion Leader: Asu Turkmen
Identification of shared and disease-specific host
gene–microbiome associations across human
diseases using multi-omic integration
by Priya et al. Nature Microbiology, Vol 7, 780-795 (2022)
- Friday, March 28
Discussion Leader: Arnab Auddy
Principled and interpretable alignability testing and integration
of single-cell data
by Ma et al. PNAS 2024:e2313719121
- Friday, April 4, 2025
Discussion Leaders: Sang Wan Lee
Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities
by Jiang et al. Frontier in Genetics 2019 Volume 10, Article 995
Clustering network layers with the strata multilayer
stochastic block model
by Stanley et al. IEEE Trans Netw Sci Eng. 2016 Mar 25;3(2):95–105.
- Friday, April 11, 2025
Discussion Leaders: Shili Lin
CoCA: Cooperative Component Analysis
by Ding et al. arXiv:2407.16870v1.
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