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Hydration Dynamics

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Last Updated:
21 Sep 2010

 

Our interests here focus on the fundamental understanding of a long standing biological question---how water controls protein structure, dynamics and function. Understanding of protein-water interactions has far-reaching implications relating to protein plasticity and recognition, protein folding and aggregation, and enzyme catalysis. We have used the naturally occurring amino acid tryptophan as a local optical probe and characterized its photophysics and photochemistry in various environments. By measuring femtosecond-resolved Stokes shifts, we have developed a powerful method to construct its environmental response function. By placing tryptophan at desirable positions along the protein with site-directed mutation and using a tryptophan scan, we have extensively studied the hydration dynamics around protein surfaces, in protein crevices, at protein-DNA interfaces, and on membrane surfaces. The dynamic motion of these biological-water molecules is being elucidated on actual time scales and at atomic scale.


Mapping solvation dynamics at the function site of flavodoxin in three redox states. C.-W. Chang, T.-F. He, L. Guo, J. A. Stevens, T. Li, L. Wang and D. Zhong, J. Am. Chem. Soc. 132, 12741 (2010). [Web link] [PDF]


Ultrafast solvation dynamics at binding and active sites of photolyases. C.-W. Chang, L. Guo, Y.-T. Kao, J. Li, C. Tan, T. Li, C. Saxena, Z. Liu, L. Wang, A. Sancar and D. Zhong, Proc. Natl. Acad. Sci. USA 107, 2914 (2010). [Web link] [PDF]


Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations. L. Zhang, Y. Yang, Y.-T. Kao, L. Wang and D. Zhong, J. Am. Chem. Soc. 131, 10677 (2009). [Web link] [PDF] [Supporting Information]


Mapping hydration dynamics around a protein surface. L. Zhang, L. Wang, Y.-T. Kao, W. Qiu, Y. Yang, O. Okobiah and D. Zhong, Proc. Natl. Acad. Sci. USA 104, 18461 (2007). [Web link] [PDF] [Supporting Information]


Dissection of complex protein dynamics in human thioredoxin. W. Qiu, L. Wang, W. Lu, A. Boechler, D. A. R. Sanders and D. Zhong, Proc. Natl. Acad. Sci. USA 104, 5366 (2007). [Web link] [PDF]


Hydration dynamics and time scales of coupled water-protein fluctuations. T. Li, A. A. Hassanali, Y.-T. Kao, D. Zhong and S. J. Singer, J. Am. Chem. Soc. 129, 3376 (2007). [Web link] [PDF] [Supporting Information]


Protein surface hydration mapped by site-specific mutations. W. Qiu, Y.-T. Kao, L. Zhang, Y. Yang, L. Wang, W. E. Stites, D. Zhong and A.H. Zewail, Proc. Natl. Acad. Sci. USA 103, 13979 (2006). [Web link] [PDF] [Supporting Information]


Ultrafast hydration dynamics in the lipidic cubic phase: Discrete water structures in nanochannels. J. Kim, W. Lu, W. Qiu, L. Wang, M. Caffrey and D. Zhong, J. Phys. Chem. B 110, 21994 (2006). [Web link] [PDF]


Ultrafast solvation dynamics of human serum albumin: Correlations with conformational transitions and site-selected recognition. W. Qiu, L. Zhang, O. Okobiah, Y. Yang, L. Wang, D. Zhong and A.H. Zewail, J. Phys.Chem. B 110, 10540 (2006). (cover story). [Web link] [PDF] [Supporting Information]


Ultrafast hydration dynamics in melittin folding and aggregation: Helix formation and tetramer self-assembly. W. Qiu, L. Zhang, Y.-T. Kao, W. Lu, T. Li, J. Kim, G. Sollenberger, L. Wang and D. Zhong, J. Phys. Chem. B. 109, 16901 (2005). [Web link] [PDF]